New England Clam Chowder

Name: New England Clam Chowder
Ingredients: 10 cherrystone or quahog clams; 2 cups water; 4 ounces chopped onions; 2 ounces chopped celery; 1 pinch dried thyme; 4 bay leaves divided; 2 whole black peppercorns; 6 ounces apple-wood smoked bacon, cut into small pieces; 2 large Spanish onions, medium diced; 1 tablespoon dried thyme; 1 teaspoon crushed red pepper flakes; 4 ounces unsalted butter; 3 Yukon gold potatoes, washed and medium diced; 2 cups heavy cream; Salt and freshly ground black pepper; 2 tablespoons freshly chopped parsley leaves; Oyster crackers, for garnish