Beef Bourguignon

Name: Beef Bourguignon
Ingredients: 1⁄4 cup all-purpose flour; 1 teaspoon salt; 1 teaspoon ground black pepper; 2 lbs cubed stew meat; 4 tablespoons butter; 1 onion, chopped; 1 red pepper, diced; 3 garlic cloves, minced; 1 lb button mushroom (Cleaned left whole); 1 lb white pearl onion, peeled; 4 carrots, peeled and sliced into 1/2 inch pieces; 2 cups red wine; 1 bay leaf; 3 tablespoons chopped fresh parsley; 1 teaspoon dried thyme